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SRX8755505: Oxford Nanopore sequencing of Escherichia coli isolate RH18|T1-C17 cultured from poultry farm faeces sample
1 OXFORD_NANOPORE (GridION) run: 138,121 spots, 909.9M bases, 790.9Mb downloads

Design: As per method in De Maio and Shaw et al. (2019, PMID 31483244): ONT sequencing libraries were prepared by multiplexing multiple DNA extracts per flowcell. Runs used four, six, or eight isolates per flowcell. See project publications for further details.
Submitted by: University of Oxford
Study: The environmental REsistome: confluence of Human and Animal Biota in antibiotic resistance spread (REHAB)
show Abstracthide Abstract
These isolates represent a dataset assembled by the REHAB team: A collaborative effort between the Animal and Plant Health Agency, the UK Centre for Ecology & Hydrology, Thames Water, Public Health England, and the University of Oxford. The focus of this study is on understanding bacterial diversity in four important clinical genera (Escherichia, Klebsiella, Enterobacter and Citrobacter), and strain, MGE and resistance gene flow amongst environmental and farm animal reservoirs, and in rivers around sewage treatment plants, in Oxfordshire, UK, in 2017.
Sample: Escherichia isolate RHB44-C17 cultured from faeces sample from poultry
SAMN15488665 • SRS6976373 • All experiments • All runs
Library:
Name: Oxford Nanopore WGS of RHB44-C17
Instrument: GridION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 138,121 spots, 909.9M bases, 790.9Mb
Run# of Spots# of BasesSizePublished
SRR12247662138,121909.9M790.9Mb2021-07-07

ID:
11386760

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